Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01991.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 517

Length: 862
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33


Found at i:678 original size:21 final size:21

Alignment explanation


    Indices: 652--692  Score: 73
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        642 ACTTAGAGCG

                      *          
        652 GAGGCAGCAGTGAGGGAGGCA
          1 GAGGCAGCAGCGAGGGAGGCA

                                
        673 GAGGCAGCAGCGAGGGAGGC
          1 GAGGCAGCAGCGAGGGAGGC

        693 GGACCAGAAC


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.27, C:0.17, G:0.54, T:0.02


Consensus pattern (21 bp):   
GAGGCAGCAGCGAGGGAGGCA
Done.