Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02001.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3083
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.39


Found at i:1482 original size:19 final size:21

Alignment explanation


    Indices: 1453--1494  Score: 61
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1443 CCACCTTCTC

                                 
       1453 TTTCAAAG-TTTCCTTTGAAT
          1 TTTCAAAGTTTTCCTTTGAAT

                                  
       1473 TTTC-AAGTTTTTCCTTTGAAT
          1 TTTCAAAG-TTTTCCTTTGAAT

             
       1494 T
          1 T

       1495 ATACAAGGAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  19    3  0.15
  20    4  0.20
  21   13  0.65

ACGTcount: A:0.21, C:0.14, G:0.10, T:0.55


Consensus pattern (21 bp):   
TTTCAAAGTTTTCCTTTGAAT
Done.