Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02004.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 479

Length: 799
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28


Found at i:594 original size:17 final size:17

Alignment explanation


    Indices: 572--606  Score: 61
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        562 GTATGTAAAA

                    *        
        572 TTGTGGCTTTGCTTGGT
          1 TTGTGGCTCTGCTTGGT

                             
        589 TTGTGGCTCTGCTTGGT
          1 TTGTGGCTCTGCTTGGT

             
        606 T
          1 T

        607 CAAGTTTCAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.00, C:0.14, G:0.34, T:0.51


Consensus pattern (17 bp):   
TTGTGGCTCTGCTTGGT
Done.