Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02004.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 543

Length: 905
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29


Found at i:700 original size:17 final size:17

Alignment explanation


    Indices: 678--712  Score: 61
    Period size: 17  Copynumber: 2.1  Consensus size: 17

        668 GTATGTAAAA

                    *        
        678 TTGTGGCTTTGCTTGGT
          1 TTGTGGCTCTGCTTGGT

                             
        695 TTGTGGCTCTGCTTGGT
          1 TTGTGGCTCTGCTTGGT

             
        712 T
          1 T

        713 CAAGTTTCAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.00, C:0.14, G:0.34, T:0.51


Consensus pattern (17 bp):   
TTGTGGCTCTGCTTGGT
Done.