Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02010.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 790

Length: 1318
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28


Found at i:988 original size:6 final size:6

Alignment explanation


    Indices: 977--1007  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        967 CCTGCAACTA

                                          *     
        977 CTCCTG CTCCTG CTCCTG CTCCTG CTTCTG C
          1 CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG C

       1008 CATTGCTACT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.00, C:0.48, G:0.16, T:0.35


Consensus pattern (6 bp):   
CTCCTG

Found at i:1309 original size:30 final size:31

Alignment explanation


    Indices: 1252--1309  Score: 75
    Period size: 30  Copynumber: 1.9  Consensus size: 31

       1242 ATGATGGCCT

                               **          
       1252 TATTTCAACATTTTATGTATTTCATGTTGTC
          1 TATTTCAACATTTTATGTAAGTCATGTTGTC

                                         
       1283 TATTT-AACATTTTATGTGAAGT-ATGTT
          1 TATTTCAACATTTTATGT-AAGTCATGTT

       1310 CGATTTGTG


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  30   17  0.71
  31    7  0.29

ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53


Consensus pattern (31 bp):   
TATTTCAACATTTTATGTAAGTCATGTTGTC
Done.