Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02010.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 702

Length: 1170
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27


Found at i:840 original size:6 final size:6

Alignment explanation


    Indices: 829--859  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        819 CCTGCAACTA

                                          *     
        829 CTCCTG CTCCTG CTCCTG CTCCTG CTTCTG C
          1 CTCCTG CTCCTG CTCCTG CTCCTG CTCCTG C

        860 CATTGCTACT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.00, C:0.48, G:0.16, T:0.35


Consensus pattern (6 bp):   
CTCCTG

Found at i:1161 original size:30 final size:31

Alignment explanation


    Indices: 1104--1161  Score: 75
    Period size: 30  Copynumber: 1.9  Consensus size: 31

       1094 ATGATGGCCT

                               **          
       1104 TATTTCAACATTTTATGTATTTCATGTTGTC
          1 TATTTCAACATTTTATGTAAGTCATGTTGTC

                                         
       1135 TATTT-AACATTTTATGTGAAGT-ATGTT
          1 TATTTCAACATTTTATGT-AAGTCATGTT

       1162 CGATTTGTG


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  30   17  0.71
  31    7  0.29

ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53


Consensus pattern (31 bp):   
TATTTCAACATTTTATGTAAGTCATGTTGTC
Done.