Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02011.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 336

Length: 561
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30


Found at i:385 original size:6 final size:6

Alignment explanation


    Indices: 370--405  Score: 56
    Period size: 6  Copynumber: 6.2  Consensus size: 6

        360 CCCGCCCCGC

                 *                                     
        370 CCTGCA CCTGCT CCTGCT CCTGCT CCTGCT -CTGCT C
          1 CCTGCT CCTGCT CCTGCT CCTGCT CCTGCT CCTGCT C

        406 TTCATATCAA


Statistics
Matches: 28,  Mismatches: 1, Indels: 2
        0.90            0.03        0.06

Matches are distributed among these distances:
   5    5  0.18
   6   23  0.82

ACGTcount: A:0.03, C:0.50, G:0.17, T:0.31


Consensus pattern (6 bp):   
CCTGCT

Done.