Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02015.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2293
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34


Found at i:219 original size:3 final size:3

Alignment explanation


    Indices: 213--253  Score: 82
    Period size: 3  Copynumber: 13.7  Consensus size: 3

        203 CCTAAAGTCT

                                                                  
        213 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CT
          1 CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CT

        254 TGCATCCTAA


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   38  1.00

ACGTcount: A:0.00, C:0.34, G:0.32, T:0.34


Consensus pattern (3 bp):   
CTG

Done.