Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02034.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3300
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30


Found at i:102 original size:18 final size:19

Alignment explanation


    Indices: 79--118  Score: 64
    Period size: 18  Copynumber: 2.2  Consensus size: 19

         69 TTCCACCCTG

                    *          
         79 AAAAAGAAGGAAAA-AAAA
          1 AAAAAGAAAGAAAAGAAAA

                               
         97 AAAAAGAAAGAAAAGAAAA
          1 AAAAAGAAAGAAAAGAAAA

               
        116 AAA
          1 AAA

        119 GCTGCTTCAC


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  18   13  0.65
  19    7  0.35

ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00


Consensus pattern (19 bp):   
AAAAAGAAAGAAAAGAAAA

Done.