Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02056.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1746
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25


Found at i:1314 original size:12 final size:12

Alignment explanation


    Indices: 1297--1323  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1287 AGCGTGTGAG

                        
       1297 ACATGAACTCAA
          1 ACATGAACTCAA

                        
       1309 ACATGAACTCAA
          1 ACATGAACTCAA

               
       1321 ACA
          1 ACA

       1324 GGGTTACAAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.52, C:0.26, G:0.07, T:0.15


Consensus pattern (12 bp):   
ACATGAACTCAA
Done.