Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02068.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2932
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33


Found at i:1605 original size:32 final size:32

Alignment explanation


    Indices: 1559--1623  Score: 121
    Period size: 32  Copynumber: 2.0  Consensus size: 32

       1549 GGGCCTTTAG

                                            
       1559 AGTAAGACTGGGGTAGTAAAGGAGGGTTGCGA
          1 AGTAAGACTGGGGTAGTAAAGGAGGGTTGCGA

                     *                      
       1591 AGTAAGACTTGGGTAGTAAAGGAGGGTTGCGA
          1 AGTAAGACTGGGGTAGTAAAGGAGGGTTGCGA

             
       1623 A
          1 A

       1624 TTTCCTTACT


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   32  1.00

ACGTcount: A:0.32, C:0.06, G:0.42, T:0.20


Consensus pattern (32 bp):   
AGTAAGACTGGGGTAGTAAAGGAGGGTTGCGA
Done.