Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02069.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 988

Length: 1647
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.36


Found at i:1538 original size:19 final size:18

Alignment explanation


    Indices: 1509--1550  Score: 66
    Period size: 19  Copynumber: 2.3  Consensus size: 18

       1499 CTCCTTGTAT

                              
       1509 TTTGTTTTTATTTATTTA
          1 TTTGTTTTTATTTATTTA

                              *
       1527 TTTGTTTATTATTTATTTT
          1 TTTGTTT-TTATTTATTTA

                 
       1546 TTTGT
          1 TTTGT

       1551 CTCTTCTGCT


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  18    7  0.32
  19   15  0.68

ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79


Consensus pattern (18 bp):   
TTTGTTTTTATTTATTTA
Done.