Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02080.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3108
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28


Found at i:2214 original size:44 final size:45

Alignment explanation


    Indices: 2157--2270  Score: 187
    Period size: 45  Copynumber: 2.6  Consensus size: 45

       2147 CCTTCACCCT

                                                 *        
       2157 CAACTGGTTCATCATCAGCACCCCCA-CCCCACCACCGCCAC-CAA
          1 CAACTGGTTCATCATCAGCACCCCCACCCCCACCACCCCCACTC-A

             *                                           
       2201 CTACTGGTTCATCATCAGCACCCCCACCCCCACCACCCCCACTCA
          1 CAACTGGTTCATCATCAGCACCCCCACCCCCACCACCCCCACTCA

                                     
       2246 CAACTGGTTCATCATCAGCACCCCC
          1 CAACTGGTTCATCATCAGCACCCCC

       2271 GCCACCCCCT


Statistics
Matches: 65,  Mismatches: 3, Indels: 3
        0.92            0.04        0.04

Matches are distributed among these distances:
  44   25  0.38
  45   39  0.60
  46    1  0.02

ACGTcount: A:0.25, C:0.52, G:0.09, T:0.15


Consensus pattern (45 bp):   
CAACTGGTTCATCATCAGCACCCCCACCCCCACCACCCCCACTCA

Done.