Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02081.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1797
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35


Found at i:1355 original size:24 final size:24

Alignment explanation


    Indices: 1323--1371  Score: 82
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1313 AGGGGGTAAT

                                     
       1323 TCTCGGCCT-TAGGCAAATTTGTTA
          1 TCTCGGCCTCT-GGCAAATTTGTTA

                                    
       1347 TCTCGGCCTCTGGCAAATTTGTTA
          1 TCTCGGCCTCTGGCAAATTTGTTA

             
       1371 T
          1 T

       1372 ACTCTGTGAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  24   23  0.96
  25    1  0.04

ACGTcount: A:0.18, C:0.22, G:0.20, T:0.39


Consensus pattern (24 bp):   
TCTCGGCCTCTGGCAAATTTGTTA
Done.