Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02083.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1946
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.27


Found at i:1807 original size:4 final size:4

Alignment explanation


    Indices: 1798--1831  Score: 59
    Period size: 4  Copynumber: 8.5  Consensus size: 4

       1788 GATTCTGACT

                              *                       
       1798 CTGC CTGC CTGC CTGT CTGC CTGC CTGC CTGC CT
          1 CTGC CTGC CTGC CTGC CTGC CTGC CTGC CTGC CT

       1832 AGCCCCATAA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   4   28  1.00

ACGTcount: A:0.00, C:0.47, G:0.24, T:0.29


Consensus pattern (4 bp):   
CTGC

Done.