Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02084.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1876
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28


Found at i:1796 original size:54 final size:54

Alignment explanation


    Indices: 1709--1816  Score: 189
    Period size: 54  Copynumber: 2.0  Consensus size: 54

       1699 GAAGATTGGA

                        *               *                         
       1709 CGCTATGTTGTTGTCACTCTTATTTTATTAATTTTCATCATGTCTTACTAGGTT
          1 CGCTATGTTGTTATCACTCTTATTTTATCAATTTTCATCATGTCTTACTAGGTT

                                                          *       
       1763 CGCTATGTTGTTATCACTCTTATTTTATCAATTTTCATCATGTCTTGCTAGGTT
          1 CGCTATGTTGTTATCACTCTTATTTTATCAATTTTCATCATGTCTTACTAGGTT

       1817 TTGTGTTATG


Statistics
Matches: 51,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  54   51  1.00

ACGTcount: A:0.19, C:0.18, G:0.13, T:0.51


Consensus pattern (54 bp):   
CGCTATGTTGTTATCACTCTTATTTTATCAATTTTCATCATGTCTTACTAGGTT
Done.