Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02105.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2882
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.28


Found at i:770 original size:183 final size:183

Alignment explanation


    Indices: 454--1007  Score: 932
    Period size: 183  Copynumber: 3.0  Consensus size: 183

        444 CTTTAATGGT

                                * *   *              *       *               
        454 ACAAATGCCGGTAATGAGACGGTTCACGATGATGAGATCTTCGAAGGGAAAGACATAGATACTGA
          1 ACAAA-GCCGGTAATGAGACAGCTCATGATGATGAGATCTTTGAAGGGAGAGACATAGATACTGA

                                    *                                        
        519 TGTTATAACAGAAGCAGATGTGGGGTTGAATAAATCTTCTACATTCGATGAAGGTACAAAAGCTT
         65 TGTTATAACAGAAGCAGATGTGGGCTTGAATAAATCTTCTACATTCGATGAAGGTACAAAAGCTT

                         *                                        
        584 GGAAGGAGTCTTCTACTGCTGAACCGGTAGAGTTAAATAAGAATTCAACAGTGG
        130 GGAAGGAGTCTTCAACTGCTGAACCGGTAGAGTTAAATAAGAATTCAACAGTGG

                                                                             
        638 ACAAAGCCGGTAATGAGACAGCTCATGATGATGAGATCTTTGAAGGGAGAGACATAGATACTGAT
          1 ACAAAGCCGGTAATGAGACAGCTCATGATGATGAGATCTTTGAAGGGAGAGACATAGATACTGAT

                                                                    *   *    
        703 GTTATAACAGAAGCAGATGTGGGCTTGAATAAATCTTCTACATTCGATGAAGGTACCAAACCTTG
         66 GTTATAACAGAAGCAGATGTGGGCTTGAATAAATCTTCTACATTCGATGAAGGTACAAAAGCTTG

                                                                 
        768 GAAGGAGTCTTCAACTGCTGAACCGGTAGAGTTAAATAAGAATTCAACAGTGG
        131 GAAGGAGTCTTCAACTGCTGAACCGGTAGAGTTAAATAAGAATTCAACAGTGG

                                                                             
        821 ACAACA-CCGGTAATGAGACAGCTCATGATGATGAGATCTTTGAAGGGAGAGACATAGATACTGA
          1 ACAA-AGCCGGTAATGAGACAGCTCATGATGATGAGATCTTTGAAGGGAGAGACATAGATACTGA

                                                                     **      
        885 TGTTATAACAGAAGCAGATGTGGGCTTGAATAAATCTTCTACATTCGATGAAGGTACTGAAGCTC
         65 TGTTATAACAGAAGCAGATGTGGGCTTGAATAAATCTTCTACATTCGATGAAGGTACAAAAGCT-

                                     *  *                  *      *
        950 T-GAAGGAGTCTTCAACTGCTGAACTGGCAGAGTTAAATAAGAATTCGACAGTGA
        129 TGGAAGGAGTCTTCAACTGCTGAACCGGTAGAGTTAAATAAGAATTCAACAGTGG

                
       1004 ACAA
          1 ACAA

       1008 TGCTGAAAGT


Statistics
Matches: 352,  Mismatches: 16, Indels: 5
        0.94            0.04        0.01

Matches are distributed among these distances:
 183  345  0.98
 184    7  0.02

ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24


Consensus pattern (183 bp):   
ACAAAGCCGGTAATGAGACAGCTCATGATGATGAGATCTTTGAAGGGAGAGACATAGATACTGAT
GTTATAACAGAAGCAGATGTGGGCTTGAATAAATCTTCTACATTCGATGAAGGTACAAAAGCTTG
GAAGGAGTCTTCAACTGCTGAACCGGTAGAGTTAAATAAGAATTCAACAGTGG
Done.