Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02113.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4718
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37


Found at i:729 original size:46 final size:46

Alignment explanation


    Indices: 679--770  Score: 184
    Period size: 46  Copynumber: 2.0  Consensus size: 46

        669 TTTGGTAATG

                                                          
        679 ACGGTAAGGATGCTTTAATTTTCCTCATGGTGCTTTAGCTTGGTTT
          1 ACGGTAAGGATGCTTTAATTTTCCTCATGGTGCTTTAGCTTGGTTT

                                                          
        725 ACGGTAAGGATGCTTTAATTTTCCTCATGGTGCTTTAGCTTGGTTT
          1 ACGGTAAGGATGCTTTAATTTTCCTCATGGTGCTTTAGCTTGGTTT

        771 TCTTTTTCTT


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   46  1.00

ACGTcount: A:0.17, C:0.15, G:0.24, T:0.43


Consensus pattern (46 bp):   
ACGGTAAGGATGCTTTAATTTTCCTCATGGTGCTTTAGCTTGGTTT
Done.