Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02113.F12

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2720
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34


Found at i:1060 original size:46 final size:46

Alignment explanation


    Indices: 1010--1101  Score: 184
    Period size: 46  Copynumber: 2.0  Consensus size: 46

       1000 TTTGGTAATG

                                                          
       1010 ACGGTAAGGATGCTTTAATTTTCCTCATGGTGCTTTAGCTTGGTTT
          1 ACGGTAAGGATGCTTTAATTTTCCTCATGGTGCTTTAGCTTGGTTT

                                                          
       1056 ACGGTAAGGATGCTTTAATTTTCCTCATGGTGCTTTAGCTTGGTTT
          1 ACGGTAAGGATGCTTTAATTTTCCTCATGGTGCTTTAGCTTGGTTT

       1102 TCTTTTTCTT


Statistics
Matches: 46,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  46   46  1.00

ACGTcount: A:0.17, C:0.15, G:0.24, T:0.43


Consensus pattern (46 bp):   
ACGGTAAGGATGCTTTAATTTTCCTCATGGTGCTTTAGCTTGGTTT
Done.