Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02116.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2351
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31


Found at i:2235 original size:3 final size:3

Alignment explanation


    Indices: 2227--2272  Score: 65
    Period size: 3  Copynumber: 14.3  Consensus size: 3

       2217 AAGGCTCGAT

                                                                        
       2227 TTA TTA TTA TTA TTA TTA TTA TTAA TTA TTAA TTA TTAA TTA TTA T
          1 TTA TTA TTA TTA TTA TTA TTA TT-A TTA TT-A TTA TT-A TTA TTA T

       2273 ATACTTTCTT


Statistics
Matches: 40,  Mismatches: 0, Indels: 6
        0.87            0.00        0.13

Matches are distributed among these distances:
   3   31  0.77
   4    9  0.22

ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63


Consensus pattern (3 bp):   
TTA

Found at i:2256 original size:7 final size:7

Alignment explanation


    Indices: 2227--2271  Score: 69
    Period size: 7  Copynumber: 6.9  Consensus size: 7

       2217 AAGGCTCGAT

                   
       2227 TTATT-A
          1 TTATTAA

                   
       2233 TTATT-A
          1 TTATTAA

                   
       2239 TTATT-A
          1 TTATTAA

                   
       2245 TTATTAA
          1 TTATTAA

                   
       2252 TTATTAA
          1 TTATTAA

                   
       2259 TTATTAA
          1 TTATTAA

                  
       2266 TTATTA
          1 TTATTA

       2272 TATACTTTCT


Statistics
Matches: 38,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   6   17  0.45
   7   21  0.55

ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62


Consensus pattern (7 bp):   
TTATTAA
Done.