Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02117.F7

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2933
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:1411 original size:41 final size:41

Alignment explanation


    Indices: 1354--1434  Score: 153
    Period size: 41  Copynumber: 2.0  Consensus size: 41

       1344 TGTATCCTTA

                                                     
       1354 ATTTAATCATCAAAATTTATCTTCAATTTCCTTTTCATAGT
          1 ATTTAATCATCAAAATTTATCTTCAATTTCCTTTTCATAGT

                              *                     
       1395 ATTTAATCATCAAAATTTGTCTTCAATTTCCTTTTCATAG
          1 ATTTAATCATCAAAATTTATCTTCAATTTCCTTTTCATAG

       1435 ATTCCTTTAA


Statistics
Matches: 39,  Mismatches: 1, Indels: 0
        0.98            0.03        0.00

Matches are distributed among these distances:
  41   39  1.00

ACGTcount: A:0.31, C:0.17, G:0.04, T:0.48


Consensus pattern (41 bp):   
ATTTAATCATCAAAATTTATCTTCAATTTCCTTTTCATAGT
Done.