Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02127.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3436
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:2846 original size:48 final size:48

Alignment explanation


    Indices: 2775--2867  Score: 177
    Period size: 48  Copynumber: 1.9  Consensus size: 48

       2765 AGAAGATAGC

                                                            
       2775 TGAGATTCCTTCTCCGACTAACGATTCTTCAAGGACAGCATATGGAGT
          1 TGAGATTCCTTCTCCGACTAACGATTCTTCAAGGACAGCATATGGAGT

                            *                            
       2823 TGAGATTCCTTCTCCGGCTAACGATTCTTCAAGGACAGCATATGG
          1 TGAGATTCCTTCTCCGACTAACGATTCTTCAAGGACAGCATATGG

       2868 TTTTAGCTCC


Statistics
Matches: 44,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  48   44  1.00

ACGTcount: A:0.26, C:0.24, G:0.22, T:0.29


Consensus pattern (48 bp):   
TGAGATTCCTTCTCCGACTAACGATTCTTCAAGGACAGCATATGGAGT
Done.