Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02130.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 384

Length: 641
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35


Found at i:13 original size:4 final size:4

Alignment explanation


    Indices: 5--42  Score: 58
    Period size: 4  Copynumber: 9.5  Consensus size: 4

          1 AAGA

                                           *      *        
          5 AAAG AAAG AAAG AAAG AAAG AAAG AGAG AAAA AAAG AA
          1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AA

         43 CCAAAAGAGA


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   4   30  1.00

ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00


Consensus pattern (4 bp):   
AAAG

Done.