Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02140.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2447
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31


Found at i:1439 original size:15 final size:15

Alignment explanation


    Indices: 1419--1451  Score: 66
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       1409 CTATATATTT

                           
       1419 ATCGAGCATTTTCTA
          1 ATCGAGCATTTTCTA

                           
       1434 ATCGAGCATTTTCTA
          1 ATCGAGCATTTTCTA

               
       1449 ATC
          1 ATC

       1452 AAAGGAACTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.27, C:0.21, G:0.12, T:0.39


Consensus pattern (15 bp):   
ATCGAGCATTTTCTA
Done.