Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02151.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1839
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27


Found at i:261 original size:6 final size:6

Alignment explanation


    Indices: 250--282  Score: 57
    Period size: 6  Copynumber: 5.5  Consensus size: 6

        240 AGGGTATTGA

                                            *     
        250 AGAAGC AGAAGC AGAAGC AGAAGC AGAACC AGA
          1 AGAAGC AGAAGC AGAAGC AGAAGC AGAAGC AGA

        283 GACAAAGAAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.52, C:0.18, G:0.30, T:0.00


Consensus pattern (6 bp):   
AGAAGC

Done.