Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga13g02165.F3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3184
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Found at i:1004 original size:146 final size:146
Alignment explanation
Indices: 738--1030 Score: 532
Period size: 146 Copynumber: 2.0 Consensus size: 146
728 TTGATTGGTT
*
738 CTCTGTGTACAACGTTGAAGGAGCTTTTAAGTAGATGAATTATTGTTAATCTTTTCCCCTTCTGA
1 CTCTGTGTACAAAGTTGAAGGAGCTTTTAAGTAGATGAATTATTGTTAATCTTTTCCCCTTCTGA
803 GTAACAAGTTAAAAGGTCTTTATGAAGAAGATTATTCAACTTCAAAGTATGGGTTATAAAGTAAG
66 GTAACAAGTTAAAAGGTCTTTATGAAGAAGATTATTCAACTTCAAAGTATGGGTTATAAAGTAAG
* *
868 GTAAAAGTTCATTGTC
131 ATAAAAGTTAATTGTC
884 CTCTGTGTACAAAGTTGAAGGAGCTTTTAAGTAGATGAATTATTGTTAATCTTTTCCCCTTCTGA
1 CTCTGTGTACAAAGTTGAAGGAGCTTTTAAGTAGATGAATTATTGTTAATCTTTTCCCCTTCTGA
* * *
949 GTAACAAGTTCAAAGGTCTTTGTGAAGAAGATTATTCAACTTCAAAGTATTGGTTATAAAGTAAG
66 GTAACAAGTTAAAAGGTCTTTATGAAGAAGATTATTCAACTTCAAAGTATGGGTTATAAAGTAAG
1014 ATAAAAGTTAATTGTC
131 ATAAAAGTTAATTGTC
1030 C
1 C
1031 AAAGTGTATA
Statistics
Matches: 141, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
146 141 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (146 bp):
CTCTGTGTACAAAGTTGAAGGAGCTTTTAAGTAGATGAATTATTGTTAATCTTTTCCCCTTCTGA
GTAACAAGTTAAAAGGTCTTTATGAAGAAGATTATTCAACTTCAAAGTATGGGTTATAAAGTAAG
ATAAAAGTTAATTGTC
Done.