Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02173.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4132
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28


Found at i:1650 original size:132 final size:132

Alignment explanation


    Indices: 1399--1882  Score: 824
    Period size: 132  Copynumber: 3.7  Consensus size: 132

       1389 GTGGCTACTT

                      *       *                *      *                      
       1399 TAGAAAACCCTCAAGTTGTTGAAATTAATCCTGGCATGGGAGTAAATTTTGAAGAATGTTCTCAG
          1 TAGAAAACCCACAAGTTGATGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG

                                           *        * *    * *               
       1464 CTTCATCCCTCTAATCAAGGAGAGGCTAGGTTGGAGGAAGGTACCCTCGTGGCTACTTTATCAAC
         66 CTTCATCCCTCTAATCAAGGAGAGGCTAGGTCGGAGGAAGTTTCCCTTGCGGCTACTTTATCAAC

              
       1529 CG
        131 CG

                      *       *                                              
       1531 TAGAAAACCCTCAAGTTGTTGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG
          1 TAGAAAACCCACAAGTTGATGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG

                                                                             
       1596 CTTCATCCCTCTAATCAAGGAGAGGCTAGGTCGGAGGAAGTTTCCCTTGCGGCTACTTTATCAAC
         66 CTTCATCCCTCTAATCAAGGAGAGGCTAGGTCGGAGGAAGTTTCCCTTGCGGCTACTTTATCAAC

              
       1661 CG
        131 CG

                  *                                                          
       1663 TAGAAACCCCACAAGTTGATGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG
          1 TAGAAAACCCACAAGTTGATGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG

                                                                             
       1728 CTTCATCCCTCTAATCAAGGAGAGGCTAGGTCGGAGGAAGTTTCCCTTGCGGCTACTTTATCAAC
         66 CTTCATCCCTCTAATCAAGGAGAGGCTAGGTCGGAGGAAGTTTCCCTTGCGGCTACTTTATCAAC

              
       1793 CG
        131 CG

                  *                           *                              
       1795 TAGAAACCCCACAAGTTGATGAAATTAATCCTGGTGTGGGAGAAAATTTTGAAGAATGTTCTCAG
          1 TAGAAAACCCACAAGTTGATGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG

                  **               
       1860 CTTCATATCTCTAATCAAGGAGA
         66 CTTCATCCCTCTAATCAAGGAGA

       1883 TATGCTCGTG


Statistics
Matches: 339,  Mismatches: 13, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
 132  339  1.00

ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28


Consensus pattern (132 bp):   
TAGAAAACCCACAAGTTGATGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG
CTTCATCCCTCTAATCAAGGAGAGGCTAGGTCGGAGGAAGTTTCCCTTGCGGCTACTTTATCAAC
CG

Done.