Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga13g02173.F3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4034
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Found at i:1552 original size:132 final size:132
Alignment explanation
Indices: 1301--1784 Score: 824
Period size: 132 Copynumber: 3.7 Consensus size: 132
1291 GTGGCTACTT
* * * *
1301 TAGAAAACCCTCAAGTTGTTGAAATTAATCCTGGCATGGGAGTAAATTTTGAAGAATGTTCTCAG
1 TAGAAAACCCACAAGTTGATGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG
* * * * *
1366 CTTCATCCCTCTAATCAAGGAGAGGCTAGGTTGGAGGAAGGTACCCTCGTGGCTACTTTATCAAC
66 CTTCATCCCTCTAATCAAGGAGAGGCTAGGTCGGAGGAAGTTTCCCTTGCGGCTACTTTATCAAC
1431 CG
131 CG
* *
1433 TAGAAAACCCTCAAGTTGTTGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG
1 TAGAAAACCCACAAGTTGATGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG
1498 CTTCATCCCTCTAATCAAGGAGAGGCTAGGTCGGAGGAAGTTTCCCTTGCGGCTACTTTATCAAC
66 CTTCATCCCTCTAATCAAGGAGAGGCTAGGTCGGAGGAAGTTTCCCTTGCGGCTACTTTATCAAC
1563 CG
131 CG
*
1565 TAGAAACCCCACAAGTTGATGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG
1 TAGAAAACCCACAAGTTGATGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG
1630 CTTCATCCCTCTAATCAAGGAGAGGCTAGGTCGGAGGAAGTTTCCCTTGCGGCTACTTTATCAAC
66 CTTCATCCCTCTAATCAAGGAGAGGCTAGGTCGGAGGAAGTTTCCCTTGCGGCTACTTTATCAAC
1695 CG
131 CG
* *
1697 TAGAAACCCCACAAGTTGATGAAATTAATCCTGGTGTGGGAGAAAATTTTGAAGAATGTTCTCAG
1 TAGAAAACCCACAAGTTGATGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG
**
1762 CTTCATATCTCTAATCAAGGAGA
66 CTTCATCCCTCTAATCAAGGAGA
1785 TATGCTCGTG
Statistics
Matches: 339, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 339 1.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.28
Consensus pattern (132 bp):
TAGAAAACCCACAAGTTGATGAAATTAATCCTGGCGTGGGAGAAAATTTTGAAGAATGTTCTCAG
CTTCATCCCTCTAATCAAGGAGAGGCTAGGTCGGAGGAAGTTTCCCTTGCGGCTACTTTATCAAC
CG
Done.