Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02182.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1861
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31


Found at i:207 original size:31 final size:31

Alignment explanation


    Indices: 169--229  Score: 88
    Period size: 31  Copynumber: 2.0  Consensus size: 31

        159 TAACCCGTGT

                        *                   
        169 GATGTCCATCATGAA-GATATCAAAGCCGTTA
          1 GATGTCCATCA-CAAGGATATCAAAGCCGTTA

                                  *       
        200 GATGTCCATCACAAGGATATCAGAGCCGTT
          1 GATGTCCATCACAAGGATATCAAAGCCGTT

        230 GATCTTGCAA


Statistics
Matches: 27,  Mismatches: 2, Indels: 2
        0.87            0.06        0.06

Matches are distributed among these distances:
  30    2  0.07
  31   25  0.93

ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25


Consensus pattern (31 bp):   
GATGTCCATCACAAGGATATCAAAGCCGTTA
Done.