Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02188.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2364
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33


Found at i:1896 original size:33 final size:33

Alignment explanation


    Indices: 1859--1945  Score: 165
    Period size: 33  Copynumber: 2.6  Consensus size: 33

       1849 TTTAAAGGAG

                                             
       1859 ATAGTCTCCGCTCAGACAGTGGTAAGCAAAGTA
          1 ATAGTCTCCGCTCAGACAGTGGTAAGCAAAGTA

                               *             
       1892 ATAGTCTCCGCTCAGACAGCGGTAAGCAAAGTA
          1 ATAGTCTCCGCTCAGACAGTGGTAAGCAAAGTA

                                 
       1925 ATAGTCTCCGCTCAGACAGTG
          1 ATAGTCTCCGCTCAGACAGTG

       1946 CGAAACGTAT


Statistics
Matches: 52,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  33   52  1.00

ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21


Consensus pattern (33 bp):   
ATAGTCTCCGCTCAGACAGTGGTAAGCAAAGTA
Done.