Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02198.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 252
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28


Found at i:129 original size:27 final size:26

Alignment explanation


    Indices: 91--142  Score: 70
    Period size: 27  Copynumber: 2.0  Consensus size: 26

         81 AGCCTTTTCT

                          *            
         91 GAAAGACTAA-TTGGATATAGAAATCG
          1 GAAAGACTAATTTGAATATA-AAATCG

                                      
        117 GAAAGATCTAATTTGAATATAAAATC
          1 GAAAGA-CTAATTTGAATATAAAATC

        143 ATACGAACTT


Statistics
Matches: 23,  Mismatches: 1, Indels: 3
        0.85            0.04        0.11

Matches are distributed among these distances:
  26    6  0.26
  27    9  0.39
  28    8  0.35

ACGTcount: A:0.48, C:0.08, G:0.17, T:0.27


Consensus pattern (26 bp):   
GAAAGACTAATTTGAATATAAAATCG
Done.