Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02203.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3247
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.34


Found at i:2126 original size:6 final size:6

Alignment explanation


    Indices: 2112--2149  Score: 67
    Period size: 6  Copynumber: 6.3  Consensus size: 6

       2102 AAATCCTCCT

                       *                                
       2112 GCCAAA GCCACA GCCAAA GCCAAA GCCAAA GCCAAA GC
          1 GCCAAA GCCAAA GCCAAA GCCAAA GCCAAA GCCAAA GC

       2150 TGAGAAGAAG


Statistics
Matches: 30,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.45, C:0.37, G:0.18, T:0.00


Consensus pattern (6 bp):   
GCCAAA

Done.