Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02205.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3279
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:17 original size:4 final size:4

Alignment explanation


    Indices: 9--52  Score: 56
    Period size: 4  Copynumber: 11.5  Consensus size: 4

          1 GAACCAAT

                                        *                  *         
          9 AAGA AAGA AAGA AAGA AAGA AAGC AAG- AA-A AAGA AAAA AAGA AA
          1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AAGA AA

         53 AGGCGCCATG


Statistics
Matches: 35,  Mismatches: 3, Indels: 4
        0.83            0.07        0.10

Matches are distributed among these distances:
   3    4  0.11
   4   31  0.89

ACGTcount: A:0.77, C:0.02, G:0.20, T:0.00


Consensus pattern (4 bp):   
AAGA

Done.