Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02227.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 378

Length: 630
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32


Found at i:337 original size:26 final size:26

Alignment explanation


    Indices: 308--389  Score: 146
    Period size: 26  Copynumber: 3.2  Consensus size: 26

        298 TGACACAAAT

                                      
        308 TGATAATGGGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                                      
        334 TGATAATGGGTTAGGTAAATGTTCCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                    *              *  
        360 TGATAATGAGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTCCA

                
        386 TGAT
          1 TGAT

        390 GGGAATTTCA


Statistics
Matches: 54,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   54  1.00

ACGTcount: A:0.32, C:0.06, G:0.26, T:0.37


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTCCA
Done.