Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02231.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2544
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.38


Found at i:311 original size:7 final size:7

Alignment explanation


    Indices: 299--329  Score: 53
    Period size: 7  Copynumber: 4.4  Consensus size: 7

        289 TTGACAAAAA

                   
        299 CTTTCCT
          1 CTTTCCT

                   
        306 CTTTCCT
          1 CTTTCCT

                   
        313 CTTTCCT
          1 CTTTCCT

                *  
        320 CTTTTCT
          1 CTTTCCT

               
        327 CTT
          1 CTT

        330 GTCACCGTGA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   7   23  1.00

ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61


Consensus pattern (7 bp):   
CTTTCCT

Done.