Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02243.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 693

Length: 1156
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37


Found at i:305 original size:14 final size:14

Alignment explanation


    Indices: 286--312  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

        276 TTGAGTTTGC

                          
        286 AGATCTATTTTATG
          1 AGATCTATTTTATG

                         
        300 AGATCTATTTTAT
          1 AGATCTATTTTAT

        313 CTATTTTGTG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.30, C:0.07, G:0.11, T:0.52


Consensus pattern (14 bp):   
AGATCTATTTTATG

Found at i:311 original size:55 final size:56

Alignment explanation


    Indices: 127--311  Score: 221
    Period size: 55  Copynumber: 3.3  Consensus size: 56

        117 CTCTCTTTCT

                *         *  *   *     *                    *       
        127 TTTTGTGAGCTCTCCTTCACCTCAATTATCTTTTTT-TTTTCAGTTTGTAGATCTA
          1 TTTTATGAGCTCTCTTTTACCCCAATTGTCTTTTTTCTTTTCAGTTTGCAGATCTA

                             *  *             *          * *        
        182 TTTTATGAGCTCTCTTTCACTCCAATTGTCTTTTCTCTTTTCAGTCTACAGATCTA
          1 TTTTATGAGCTCTCTTTTACCCCAATTGTCTTTTTTCTTTTCAGTTTGCAGATCTA

                *                                    *              
        238 TTTTGTGAGCTCTCTTTTACCCCAATTGT-TTTTTTCTTTTGAGTTTGCAGATCTA
          1 TTTTATGAGCTCTCTTTTACCCCAATTGTCTTTTTTCTTTTCAGTTTGCAGATCTA

                     *   *     
        293 TTTTATGAGATCTATTTTA
          1 TTTTATGAGCTCTCTTTTA

        312 TCTATTTTGT


Statistics
Matches: 110,  Mismatches: 19, Indels: 2
        0.84            0.15        0.02

Matches are distributed among these distances:
  55   68  0.62
  56   42  0.38

ACGTcount: A:0.17, C:0.19, G:0.11, T:0.52


Consensus pattern (56 bp):   
TTTTATGAGCTCTCTTTTACCCCAATTGTCTTTTTTCTTTTCAGTTTGCAGATCTA
Done.