Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02243.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1286
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38


Found at i:248 original size:56 final size:54

Alignment explanation


    Indices: 127--301  Score: 215
    Period size: 55  Copynumber: 3.2  Consensus size: 54

        117 CTCTCTTTCT

                *         *            *       *           *       
        127 TTTTGTGAGCTCTCCTTCACCTCAATTATCTTTTTTTTTTCAGTTTGTAGATCTA
          1 TTTTATGAGCTCTCTTTCACC-CAATTGTCTTTTTCTTTTCAGTTTGCAGATCTA

                                                         * *        
        182 TTTTATGAGCTCTCTTTCACTCCAATTGTCTTTTCTCTTTTCAGTCTACAGATCTA
          1 TTTTATGAGCTCTCTTTCAC-CCAATTGTCTTTT-TCTTTTCAGTTTGCAGATCTA

                *            *           *          *              
        238 TTTTGTGAGCTCTCTTTTACCCCAATTGTTTTTTTCTTTTGAGTTTGCAGATCTA
          1 TTTTATGAGCTCTCTTTCA-CCCAATTGTCTTTTTCTTTTCAGTTTGCAGATCTA

                     
        293 TTTTATGAG
          1 TTTTATGAG

        302 ATCTATTTTG


Statistics
Matches: 103,  Mismatches: 14, Indels: 6
        0.84            0.11        0.05

Matches are distributed among these distances:
  55   55  0.53
  56   47  0.46
  57    1  0.01

ACGTcount: A:0.17, C:0.20, G:0.12, T:0.51


Consensus pattern (54 bp):   
TTTTATGAGCTCTCTTTCACCCAATTGTCTTTTTCTTTTCAGTTTGCAGATCTA

Found at i:305 original size:14 final size:14

Alignment explanation


    Indices: 286--315  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        276 TTGAGTTTGC

                          
        286 AGATCTATTTTATG
          1 AGATCTATTTTATG

                       *  
        300 AGATCTATTTTGTG
          1 AGATCTATTTTATG

              
        314 AG
          1 AG

        316 CTCCCTTTTA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.27, C:0.07, G:0.20, T:0.47


Consensus pattern (14 bp):   
AGATCTATTTTATG
Done.