Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02254.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3742
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35


Found at i:3504 original size:83 final size:83

Alignment explanation


    Indices: 3357--3513  Score: 228
    Period size: 83  Copynumber: 1.9  Consensus size: 83

       3347 GGTGGATATT

                                            *   *          *      *    *     
       3357 TGAGAAAATATAGACAAAAATAATATTTTTGAGAAATTGGCTTAAAGCAAAAAATACATCTCTTT
          1 TGAGAAAATATAGACAAAAATAATATTTTTGAAAAAATGGCTTAAAGAAAAAAAAACATATCTTT

                              
       3422 ACGAAACTTGTTGTGTGA
         66 ACGAAACTTGTTGTGTGA

                                                                      *      
       3440 TGAGAAAATATAGACAAAAATAATATTTTT-AAAAAATGAGCTT-AAGAAAAAAAAAATATATCT
          1 TGAGAAAATATAGACAAAAATAATATTTTTGAAAAAATG-GCTTAAAG-AAAAAAAAACATATCT

                       
       3503 TTACGAAACTT
         64 TTACGAAACTT

       3514 ATTAAGTGAT


Statistics
Matches: 66,  Mismatches: 6, Indels: 4
        0.87            0.08        0.05

Matches are distributed among these distances:
  82    9  0.14
  83   57  0.86

ACGTcount: A:0.49, C:0.08, G:0.13, T:0.30


Consensus pattern (83 bp):   
TGAGAAAATATAGACAAAAATAATATTTTTGAAAAAATGGCTTAAAGAAAAAAAAACATATCTTT
ACGAAACTTGTTGTGTGA

Done.