Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02260.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 529

Length: 883
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27


Found at i:598 original size:39 final size:39

Alignment explanation


    Indices: 544--684  Score: 210
    Period size: 39  Copynumber: 3.6  Consensus size: 39

        534 CGCCGCCACG

                  *         *                    * 
        544 CCGAGCCCCACCCCGCATGGAACTTCAAGTCCTCCTCGT
          1 CCGAGCGCCACCCCGCCTGGAACTTCAAGTCCTCCTCCT

                            *                      
        583 CCGAGCGCCACCCCGCGTGGAACTTCAAGTCCTCCTCCT
          1 CCGAGCGCCACCCCGCCTGGAACTTCAAGTCCTCCTCCT

              *     *                              
        622 CCAAGCGCTACCCCGCCTGGAACTTCAAGTCCTCCTCCT
          1 CCGAGCGCCACCCCGCCTGGAACTTCAAGTCCTCCTCCT

                     *  *           
        661 CCGAGCGCCGCCACGCCTGGAACT
          1 CCGAGCGCCACCCCGCCTGGAACT

        685 CCGAGCGCCA


Statistics
Matches: 92,  Mismatches: 10, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  39   92  1.00

ACGTcount: A:0.17, C:0.46, G:0.20, T:0.17


Consensus pattern (39 bp):   
CCGAGCGCCACCCCGCCTGGAACTTCAAGTCCTCCTCCT
Done.