Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02266.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4294
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.39


Found at i:39 original size:3 final size:3

Alignment explanation


    Indices: 31--56  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

         21 TTGGAACACC

                                              
         31 CTT CTT CTT CTT CTT CTT CTT CTT CT
          1 CTT CTT CTT CTT CTT CTT CTT CTT CT

         57 ATCACTATCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65


Consensus pattern (3 bp):   
CTT

Found at i:3789 original size:34 final size:34

Alignment explanation


    Indices: 3748--3815  Score: 136
    Period size: 34  Copynumber: 2.0  Consensus size: 34

       3738 TACTCGAAAA

                                              
       3748 TTTTTTACTTAAATATCACATTTAAAATCGTAAT
          1 TTTTTTACTTAAATATCACATTTAAAATCGTAAT

                                              
       3782 TTTTTTACTTAAATATCACATTTAAAATCGTAAT
          1 TTTTTTACTTAAATATCACATTTAAAATCGTAAT

       3816 CTTTCTTTTA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47


Consensus pattern (34 bp):   
TTTTTTACTTAAATATCACATTTAAAATCGTAAT
Done.