Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02267.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 471

Length: 785
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:677 original size:34 final size:34

Alignment explanation


    Indices: 639--706  Score: 136
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        629 TAAAAGAAAG

                                              
        639 ATTACGATTTTAAATGTGATATTTAAGTAAAAAA
          1 ATTACGATTTTAAATGTGATATTTAAGTAAAAAA

                                              
        673 ATTACGATTTTAAATGTGATATTTAAGTAAAAAA
          1 ATTACGATTTTAAATGTGATATTTAAGTAAAAAA

        707 TTTTCGAGTA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38


Consensus pattern (34 bp):   
ATTACGATTTTAAATGTGATATTTAAGTAAAAAA
Done.