Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02269.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3299
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31


Found at i:593 original size:27 final size:27

Alignment explanation


    Indices: 563--616  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        553 TTTCTTTGGG

                                       
        563 ATGGTTGCTCTGATCCAAAGAAGATGC
          1 ATGGTTGCTCTGATCCAAAGAAGATGC

                                       
        590 ATGGTTGCTCTGATCCAAAGAAGATGC
          1 ATGGTTGCTCTGATCCAAAGAAGATGC

        617 TTGAAGTCCT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26


Consensus pattern (27 bp):   
ATGGTTGCTCTGATCCAAAGAAGATGC
Done.