Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02270.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2983
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Found at i:1485 original size:21 final size:21

Alignment explanation


    Indices: 1459--1499  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1449 CCGGACCAAA

                                 
       1459 TCCTGATCCAGACACGACAAG
          1 TCCTGATCCAGACACGACAAG

                                
       1480 TCCTGATCCAGACACGACAA
          1 TCCTGATCCAGACACGACAA

       1500 ATCAACAAGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.34, C:0.34, G:0.17, T:0.15


Consensus pattern (21 bp):   
TCCTGATCCAGACACGACAAG

Found at i:1658 original size:14 final size:14

Alignment explanation


    Indices: 1639--1668  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       1629 AAGATACTGA

                          
       1639 TTCCAGTAAAGGAG
          1 TTCCAGTAAAGGAG

                     *    
       1653 TTCCAGTAATGGAG
          1 TTCCAGTAAAGGAG

              
       1667 TT
          1 TT

       1669 AACCAAGTGT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30


Consensus pattern (14 bp):   
TTCCAGTAAAGGAG
Done.