Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02274.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1778
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:1664 original size:2 final size:2

Alignment explanation


    Indices: 1657--1693  Score: 58
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       1647 TTTTGTCGTC

                                        *                           
       1657 AT AT AT AT AT AT A- AT AT AC AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       1694 CCTACACCTT


Statistics
Matches: 32,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   31  0.97

ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46


Consensus pattern (2 bp):   
AT

Done.