Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02284.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2807
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28


Found at i:109 original size:23 final size:27

Alignment explanation


    Indices: 73--135  Score: 126
    Period size: 27  Copynumber: 2.3  Consensus size: 27

         63 TTGGCTGTAT

                                       
         73 CTCTCTCTTCCTTCAGTTTTCTTCTGC
          1 CTCTCTCTTCCTTCAGTTTTCTTCTGC

                                       
        100 CTCTCTCTTCCTTCAGTTTTCTTCTGC
          1 CTCTCTCTTCCTTCAGTTTTCTTCTGC

                     
        127 CTCTCTCTT
          1 CTCTCTCTT

        136 TCATTCGAGA


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   36  1.00

ACGTcount: A:0.03, C:0.38, G:0.06, T:0.52


Consensus pattern (27 bp):   
CTCTCTCTTCCTTCAGTTTTCTTCTGC
Done.