Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02303.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 759

Length: 1265
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:1218 original size:80 final size:80

Alignment explanation


    Indices: 1085--1242  Score: 282
    Period size: 80  Copynumber: 2.0  Consensus size: 80

       1075 TATTAAATTA

                                                                             
       1085 ATGTTACAAATAATAGATGGAGTCCTATATCTGAGATTTCCATTCTTGTAATGTATTACCATGTT
          1 ATGTTACAAATAATAGATGGAGTCCTATATCTGAGATTTCCATTCTTGTAATGTATTACCATGTT

                           
       1150 GTAGTTTTCTTTTCC
         66 GTAGTTTTCTTTTCC

                                           *                                 
       1165 ATGTTACAAATAATA-ACTGGAGTCCTATATTTGAGATTTCCATTCTTGTAATGTATTACCATGT
          1 ATGTTACAAATAATAGA-TGGAGTCCTATATCTGAGATTTCCATTCTTGTAATGTATTACCATGT

                     *    
       1229 TGTAGTTTTTTTTT
         65 TGTAGTTTTCTTTT

       1243 TCCTCATTAA


Statistics
Matches: 75,  Mismatches: 2, Indels: 2
        0.95            0.03        0.03

Matches are distributed among these distances:
  79    1  0.01
  80   74  0.99

ACGTcount: A:0.27, C:0.13, G:0.15, T:0.46


Consensus pattern (80 bp):   
ATGTTACAAATAATAGATGGAGTCCTATATCTGAGATTTCCATTCTTGTAATGTATTACCATGTT
GTAGTTTTCTTTTCC
Done.