Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02304.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6837
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31


Found at i:5715 original size:11 final size:11

Alignment explanation


    Indices: 5701--5727  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

       5691 AAATTATTTT

                       
       5701 TGTGTTTATTA
          1 TGTGTTTATTA

                       
       5712 TGTGTTTATTA
          1 TGTGTTTATTA

                 
       5723 TGTGT
          1 TGTGT

       5728 GTGGAAATTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.15, C:0.00, G:0.22, T:0.63


Consensus pattern (11 bp):   
TGTGTTTATTA

Found at i:5980 original size:27 final size:27

Alignment explanation


    Indices: 5928--5981  Score: 74
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       5918 GGTTTTATAT

                                 *     
       5928 TAATTAATAAAGGTTATATATGTAAAA
          1 TAATTAATAAAGGTTATATATATAAAA

                       *                
       5955 TAATTAAT-AATGTTATATAATATAAAA
          1 TAATTAATAAAGGTTATAT-ATATAAAA

       5982 CATAAAATAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  26    9  0.38
  27   15  0.62

ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39


Consensus pattern (27 bp):   
TAATTAATAAAGGTTATATATATAAAA
Done.