Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02307.C4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4235
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33


Found at i:3036 original size:17 final size:18

Alignment explanation


    Indices: 3009--3042  Score: 61
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       2999 GGCCTACACC

                              
       3009 AAAACTAAAACCAAAAAT
          1 AAAACTAAAACCAAAAAT

                             
       3027 AAAA-TAAAACCAAAAA
          1 AAAACTAAAACCAAAAA

       3043 AATAAATCCA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17   12  0.75
  18    4  0.25

ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09


Consensus pattern (18 bp):   
AAAACTAAAACCAAAAAT
Done.