Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00907.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 757

Length: 1263
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.34


Found at i:373 original size:136 final size:136

Alignment explanation


    Indices: 88--360  Score: 537
    Period size: 136  Copynumber: 2.0  Consensus size: 136

         78 GAGTAGTCTC

                         *                                                   
         88 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
          1 CCCAAATGGGCTTACATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                                                             
        153 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
         66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA

                  
        218 CTGTTA
        131 CTGTTA

                                                                             
        224 CCCAAATGGGCTTACATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
          1 CCCAAATGGGCTTACATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                                                             
        289 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
         66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA

                  
        354 CTGTTA
        131 CTGTTA

             
        360 C
          1 C

        361 TTGAATGGGC


Statistics
Matches: 136,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
 136  136  1.00

ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32


Consensus pattern (136 bp):   
CCCAAATGGGCTTACATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Done.