Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g02308.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 418

Length: 697
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30


Found at i:468 original size:17 final size:18

Alignment explanation


    Indices: 446--479  Score: 61
    Period size: 17  Copynumber: 1.9  Consensus size: 18

        436 TGGATTTATT

                              
        446 TTTTTGGTTTTA-TTTTA
          1 TTTTTGGTTTTAGTTTTA

                             
        463 TTTTTGGTTTTAGTTTT
          1 TTTTTGGTTTTAGTTTT

        480 GGTGTAGGCC


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  17   12  0.75
  18    4  0.25

ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76


Consensus pattern (18 bp):   
TTTTTGGTTTTAGTTTTA
Done.